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Pubblicazioni dell'autore: Elisa Ficarra [Rubrica]

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Numero di pubblicazioni : 88.

In corso di stampa

Articolo in atti di convegno Francesco, Ponzio; Enrico, Macii; Elisa, Ficarra; Santa Di Cataldo,
Colorectal Cancer Classification using Deep Convolutional Networks - An Experimental Study. In: 11th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2018). (In stampa)

2017

Articolo di rivista Paciello, Giulia; Ficarra, Elisa (2017)
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. In: BMC BIOINFORMATICS, vol. 18 n. 1. - ISSN 1471-2105
Web of Science: 0 - Scopus: 0

Articolo di rivista Di Cataldo, Santa; Ficarra, Elisa (2017)
Mining textural knowledge in biological images: applications, methods and trends. In: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, vol. 15, pp. 56-67. - ISSN 2001-0370
Scopus: 0

Articolo di rivista Isella, Claudio; Brundu, Francesco Gavino; Bellomo, Sara E.; Galimi, Francesco; Zanella, Eugenia; Consalvo Petti, Roberta; Fiori, Alessandro; Orzan, Francesca; Senetta, Rebecca; Boccaccio, Carla; Ficarra, Elisa; Marchionni, Luigi; Trusolino, Livio; Medico, Enzo; Bertotti, Andrea (2017)
Selective analysis of cancer-cell intrinsic transcriptional traits defines novel clinically relevant subtypes of colorectal cancer. In: NATURE COMMUNICATIONS, vol. 8 n. 15107. - ISSN 2041-1723
Web of Science: 5 - Scopus: 5

Articolo in atti di convegno Ciglieri, Elisa; Vacca, Maurizia; Ferrini, Francesco; Di Cataldo Santa, ; Ficarra, Elisa; Salio, Chiara (2017)
Spatial distribution of peptidergic and non-peptidergic nociceptors in mouse dorsal root ganglia: a cluster story. In: XI Congresso Nazionale Associazione Italiana Morfologi Veterinari, Roma (ITA), 25-26 Maggio 2017.

Articolo in atti di convegno Gianvito, Urgese; Giulia, Paciello; Enrico, Macii; Andrea, Acquaviva; Elisa, Ficarra (2017)
isomiR-SEA: miRNA and isomiR expression level detection in seven RNA-Seq datasets. In: Joint 25th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 16th European Conference on Computational Biology (ECCB) 2017, Prague, 21-25 July 2017.

Articolo in atti di convegno Ponzio, Francesco; Macii, Enrico; Ficarra, Elisa; Di Cataldo, Santa (2017)
A multi-modal brain image registration framework for US-guided neuronavigation systems. Integrating MR and US for minimally invasive neuroimaging. In: 10th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2017), Porto, Portugal, 21-23 February 2017. pp. 114-121
Web of Science: 0

2016

Articolo di rivista Di Cataldo, Santa; Tonti, Simone; Bottino, Andrea; Ficarra, Elisa (2016)
ANAlyte: a modular image analysis tool for ANA testing with Indirect Immunofluorescence. In: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, vol. 128, pp. 86-99. - ISSN 0169-2607
Web of Science: 1 - Scopus: 1
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Articolo in atti di convegno Di Cataldo, Santa; Tonti, Simone; Ciglieri, Elisa; Ferrini, Francesco; Macii, Enrico; Ficarra, Elisa; Salio, Chiara (2016)
Automated 3D immunofluorescence analysis of Dorsal Root Ganglia for the investigation of neural circuit alterations: a preliminary study. In: 2016 Federated Conference on Computer Science and Information Systems, Gdansk, 11-14 September 2016. pp. 65-70

Articolo in atti di convegno A Padella, G Simonetti, G Paciello, A Ferrari, E Zago, C Baldazzi, V Guadagnuolo, C Papayannidis, V Robustelli, E Imbrogno, N Testoni, M Cavo, M Delledonne, I Iacobucci, Ct Storlazzi, E Ficarra, G Martinelli (2016)
A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA. In: 21st Congress Of The European Hematology Association, Copenhagen, Denmark, June 9–12, 2016. pp. 666-667
Web of Science: 0

Articolo in atti di convegno Paciello, G.; Pighi, C.; Ficarra, E.; Zamo', A. (2016)
Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies. In: EAHP 2016: 18th Meeting of the European Association for Hemathopathology, Basilea, 3-8 Sept. 2016.

Articolo di rivista Simona Soverini, Caterina De Benedittis, Michela Rondoni, Cristina Papayannidis, Elisa Ficarra, Giulia Paciello, Marco Manfrini, Manuela Mancini, Roberta Zanotti, Luigi Scaffidi, Giorgina Specchia, Francesco Albano, Serena Merante, Chiara Elena, Livio Pagano, Domenica Gangemi, Patrizia Tosi, Luana Bavaro, (2016)
The Genomic and Transcriptomic Landscape of Systemic Mastocytosis. In: BLOOD, vol. 128 n. 22. - ISSN 0006-4971
Web of Science: 0

Articolo di rivista Antonella Padella, Giorgia Simonetti, Anna Ferrari, Giulia Paciello, Elisa Zago, Carmen Baldazzi, Viviana Guadagnuolo, Cristina Papayannidis, Valentina Robustelli, Enrica Imbrogno, Nicoletta Testoni, Massimo Delledonne, Ilaria Iacobucci, Tiziana Clelia Storlazzi, Elisa Ficarra, Pier-Luigi Lollini And Giovanni Martinelli (2016)
Novel fusion transcripts identified by RNAseq cooperate with somatic mutations in the pathogenesis of acute myeloid leukemia. In: CANCER RESEARCH, vol. 76 n. 14, p. 113. - ISSN 1538-7445
Web of Science: 0

Articolo di rivista Andrea Bertotti, Claudio Isella, Sara E. Bellomo, Francesco Brundu, Francesco Galimi, Elisa Ficarra, Livio Trusolino And Enzo Medico (2016)
Unsupervised analysis of cancer-cell intrinsic transcriptional traits defines a new classification system for colorectal cancer with improved predictive and prognostic value. In: CANCER RESEARCH, vol. 76 n. 14, p. 107. - ISSN 1538-7445
Web of Science: 1

Articolo di rivista Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa (2016)
isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. In: BMC BIOINFORMATICS, vol. 17 n. 148. - ISSN 1471-2105
Web of Science: 2 - Scopus: 2
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2015

Articolo di rivista Ramona Crescenzo; Francesco Abate; Elena Lasorsa; Fabrizio Tabbo’; Marcello Gaudiano; Nicoletta Chiesa; Filomena Di Giacomo; Elisa Spaccarotella; Luigi Barbarossa; Elisabetta Ercole; Maria Todaro; Michela Boi; Andrea Acquaviva; Elisa Ficarra; Domenico Novero; Andrea Rinaldi; Thomas Tousseyn; Andreas Rosenwald; Lukas Kenner; Lorenzo Cerroni; Alexander Tzankov; Maurilio Ponzoni; Marco Paulli; Dennis Weisenburger; Wing C. Chan; Javeed Iqbal; Miguel A. Piris; Alberto Zamo’; Carmela Ciardullo; Davide Rossi; Gianluca Gaidano; Stefano Pileri; Enrico Tiacci; Brunangelo Falini; Leonard D. Shultz; Laurence Mevellec; Jorge E. Vialard; Roberto Piva; Francesco Bertoni; Raul Rabadan; Giorgio Inghirami (2015)
Convergent Mutations and Kinase Fusions Lead to Oncogenic STAT3 Activation in Anaplastic Large Cell Lymphoma. In: CANCER CELL, vol. 27 n. 4, pp. 516-532. - ISSN 1535-6108 [Disponibilità ristretta]
Web of Science: 76 - Scopus: 79
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Articolo di rivista Cantini, Laura; Isella, Claudio; Petti, Consalvo; Picco, Gabriele; Chiola, Simone; Ficarra, Elisa; Caselle, Michele; Medico, Enzo (2015)
MicroRNA/mRNA interactions underlying colorectal cancer molecular subtypes. In: NATURE COMMUNICATIONS, vol. 6 n. 8878, pp. 1-12. - ISSN 2041-1723
Web of Science: 8 - Scopus: 10
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Articolo in atti di convegno Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea (2015)
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools. In: RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition, Oxford (UK), 24-26 March 2015.
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Articolo di rivista Padella, A.; Simonetti, G.; Paciello,G.; Ferrari, A.; Zago, E.; Baldazzi, C.; Guadagnuolo, V.; Papayannidis, C.; Robustelli, V.; Imbrogno, E.; Testoni, N.; Musuraca, G.; Soverini, S.; Delledonne, M.; Iacobucci, I.; Storlazzi, C.T.; Ficarra, E.; Martinelli, G. (2015)
RNA Sequencing Reveals Novel and Rare Fusion Transcripts in Acute Myeloid Leukemia. In: BLOOD, vol. 126, p. 3627. - ISSN 0006-4971
Web of Science: 0

Articolo in atti di convegno Tonti S.; Di Cataldo S.; Macii E.; Ficarra E. (2015)
Unsupervised HEp-2 mitosis recognition in Indirect Immunofluorescence Imaging. In: 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2015), Milano, 25-29 August, 2015. pp. 8135-8138
Web of Science: 3 - Scopus: 3

Articolo di rivista Giulia Paciello; Andrea Acquaviva; Chiara Pighi; Alberto Ferrarini; Enrico Macii; Alberto Zamò; Elisa Ficarra (2015)
VDJSeq-Solver: In Silico V(D)J Recombination Detection tool. In: PLOS ONE, vol. 10 n. 3, pp. 1-26. - ISSN 1932-6203
Web of Science: 5 - Scopus: 5
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Articolo di rivista Simone Tonti;Santa Di Cataldo;Andrea Bottino;Elisa Ficarra (2015)
An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test. In: COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, vol. 40, pp. 62-69. - ISSN 0895-6111
Web of Science: 14 - Scopus: 18
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Articolo in atti di convegno Ciglieri, Elisa; Ferrini, Francesco; Tonti, Simone; Di Cataldo, Santa; Ficarra, Elisa; Salio, Chiara (2015)
An integrated approach for morphofunctional analysis of DRGs in normal and diabetic mice. In: XVI Congress for the Italian Society for Neuroscience, Cagliari, Italy, October 8th -11th, 2015..

Articolo di rivista F Abate; M Todaro; J-A Van Der Krogt; M Boi; I Landra; R Machiorlatti; F Tabbò; K Messana ; A Barreca; D Novero; M Gaudiano; S Aliberti; F Di Giacomo; T Tousseyn; E Lasorsa; R Crescenzo; L Bessone; E Ficarra; A Acquaviva; A Rinaldi; M Ponzoni; Dl Longo; S Aime; M Cheng; B Ruggeri; Pp Piccaluga; S Pileri; E Tiacci; B Falini; B Pera-Gresely; L Cerchietti; J Iqbal; Wc Chan; Ld Shultz; I Kwee; R Piva; I Wlodarska; R Rabadan; F Bertoni; G Inghirami; The European T-Cell Lymphoma Study Group (2015)
A novel patient-derived tumorgraft model with TRAF1-ALK anaplastic large-cell lymphoma translocation. In: LEUKEMIA, vol. 29 n. 6, pp. 1390-1401. - ISSN 0887-6924
Web of Science: 10 - Scopus: 13

2014

Articolo di rivista Paula H. Reyes-Herrera; Elisa Ficarra (2014)
Computational Methods for CLIP-seq Data Processing. In: BIOINFORMATICS AND BIOLOGY INSIGHTS, vol. 8, pp. 199-207. - ISSN 1177-9322
Scopus: 9
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Articolo in atti di convegno Urgese G.; Paciello G.; Acquaviva A.; Ficarra E.; Graziano M.; Zamboni M. (2014)
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014. pp. 1347-1358
Web of Science: 3
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Articolo di rivista Natale, M.; Benso, A.; Di Carlo, S.; Ficarra, E. (2014)
FunMod: A Cytoscape Plugin for Identifying Functional Modules in Undirected Protein-Protein Networks. In: GENOMICS, PROTEOMICS & BIOINFORMATICS, vol. 12 n. 4, pp. 178-186. - ISSN 1672-0229 [Disponibilità ristretta]
Scopus: 3
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Articolo in atti di convegno Natale, Massimo; Benso, Alfredo; Di Carlo, Stefano; Ficarra, Elisa (2014)
Indentifying sub-network functional modules in protein undirected networks. In: BIOINFORMATICS 2014, Eseo, Angers, France, 3-6 March 2014.
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Articolo di rivista Antonella Padella; Giorgia Simonetti; Viviana Guadagnuolo; Emanuela Ottaviani; Anna Ferrari; Elisa Zago; Francesca Griggio; Marianna Garonzi; Giulia Paciello; Simona Bernardi; Carmen Baldazzi; Cristina Papayannidis; Maria Chiara Abbenante; Francesca Volpato; Raffaele Calogero; Nicoletta Testoni; Elisa Ficarra; Alberto Ferrarini; Massimo Delledonne; Ilaria Iacobucci; Giovanni Martinelli (2014)
Next-Generation Sequencing Analysis Revealed That BCL11B Chromosomal Translocation Cooperates with Point Mutations in the Pathogenesis of Acute Myeloid Leukemia. In: BLOOD, vol. 124 n. 21. - ISSN 0006-4971
Web of Science: 0

Articolo in atti di convegno Paciello Giulia; Andrea Acquaviva; Consalvo Petti; Claudio Isella; Enzo Medico; Elisa Ficarra (2014)
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. In: BIOSTEC 2014, Eseo, Angers, Loire Valley, France, 3-6 March 2014. pp. 142-148
Web of Science: 0 - Scopus: 0

Articolo di rivista Francesco Abate; Sakellarios Zairis; Elisa Ficarra; Andrea Acquaviva; Chris H Wiggins; Veronique Frattini; Anna Lasorella; Antonio Iavarone; Giorgio Inghirami; Raul Rabadan (2014)
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer. In: BMC SYSTEMS BIOLOGY, vol. 8 n. 97. - ISSN 1752-0509
Web of Science: 14 - Scopus: 13
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Capitolo di libro I. Ul Islam; S. Di Cataldo; A. Bottino; E. Macii; E. Ficarra (2014)
A Preliminary Analysis on HEp-2 Pattern Classification: Evaluating Strategies Based on Support Vector Machines and Subclass Discriminant Analysis. In: Biomedical Engineering Systems and Technologies. Springer, Berlin Heidelberg, pp. 176-190. ISBN 9783662444856
Web of Science: 1 - Scopus: 0

Articolo di rivista S. Di Cataldo; A. Bottino; I. Ul Islam; T.F. Vieira; E. Ficarra (2014)
Subclass Discriminant Analysis of Morphological and Textural Features for HEp-2 Staining Pattern Classification. In: PATTERN RECOGNITION, vol. 47, pp. 2389-2399. - ISSN 0031-3203
Web of Science: 15 - Scopus: 21
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Articolo in atti di convegno Urgese G.; Paciello G.; Isella C.; Medico E.; Macii E.; Ficarra E.; Acquaviva A. (2014)
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014. pp. 1015-1026
Web of Science: 1
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2013

Articolo di rivista Ardita Shkurti; Mario Orsi; Enrico Macii; Elisa Ficarra*; Andrea Acquaviva* (2013)
Acceleration of Coarse Grain Molecular Dynamics on GPU Architectures. In: JOURNAL OF COMPUTATIONAL CHEMISTRY, vol. 34 n. 10, pp. 803-818. - ISSN 0192-8651
Web of Science: 3 - Scopus: 4
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Articolo in atti di convegno I. Ul Islam; S. Di Cataldo; A. Bottino; E. Ficarra; E. Macii (2013)
Classification of HEp-2 staining patterns in ImmunoFluorescence images. Comparison of Support Vector Machines and Subclass Discriminant Analysis strategies. In: BIOINFORMATICS (International Conference on Bioinformatics Models, Methods and Algorithms) 2013, Barcelona (SP), 11-14 February 2013. pp. 1-9
Web of Science: 0 - Scopus: 1
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Articolo di rivista Abate F.; Acquaviva A.; Ficarra E.; Piva R.; Macii E. (2013)
Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes. In: IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, vol. 10 n. 3, pp. 619-631. - ISSN 1545-5963
Web of Science: 0 - Scopus: 0

Articolo in atti di convegno Abate F.; Ficarra E.; Acquaviva A.; Macii E. (2013)
Improving Latent Semantic Analysis of Biomedical Literature Integrating UMLS Metathesaurus and Biomedical Pathways Databases. In: 4th International Joint Conference, BIOSTEC, Rome, Italy, January 26-29, 2011. pp. 173-187

Articolo di rivista Francesco Abate; Andrea Acquaviva; Elisa Ficarra; Enrico Macii (2013)
Integration of Literature with Heterogeneous Information for Genes Correlation Scoring. In: ACM JOURNAL ON EMERGING TECHNOLOGIES IN COMPUTING SYSTEMS, vol. 9 n. 4. - ISSN 1550-4832
Web of Science: 0 - Scopus: 0

Articolo in atti di convegno Ardita Shkurti, Mario Orsi, Andrea Acquaviva, Elisa Ficarra, Enrico Macii, Sophia Wheeler, Jonathan W. Essex (2013)
Optimization of Molecular Dynamics Simulations from a High Performance Computing Viewpoint. In: 2nd Annual CCP Bio-Sim Conference: Frontiers of Biomolecular Simulations, Nottingham, United Kingdom, 25-27 March 2013.

Articolo in atti di convegno Giulia Paciello; Elisa Ficarra; Alberto Zamò; Chiara Pighi; Carmelo Foti; Francesco Abate; Enrico Macii; Andrea Acquaviva (2013)
A novel pipeline for V(D)J junction identification using RNA-Seq paired-end reads. In: Bioinformatics 2013, International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11-14 February 2013.
Web of Science: 0 - Scopus: 0
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2012

Articolo di rivista F. Tabbó; A. Barreca; R. Piva; G. Inghirami; R. Bruna; D. Corino; D. Cortese; R. Crescenzo; G. Cuccuru; F. Di Giacomo; A. Fioravanti; M. Ladetto; I. Landra; K. Messana; R. Machiorlatti; B. Martinoglio; E. Medico; M. Mossino; E. Pellegrino; M. Todaro; P. Campisi; L. Chiusa; A. Chiappella; D. Novero; U. Vitolo; F. Abate; A. Acquaviva; E. Ficarra; R. Freilone; M. Chilosi; A. Zamó; F. Facchetti; S. Lonardi; A. De Chiara; F. Fulciniti; C. Doglioni; M. Ponzoni; L. Agnelli; A. Neri; K. Todoerti; C. Agostinelli; P.P. Piccaluga; S. Pileri; B. Falini; E. Tiacci; P. Van Loo; T. Tousseyn; C. De Wolf-Peeters; E. Geissinger; H.K. Muller-Hermelink; A. Rosenwald; M.A. Pirisand; M.E. Rodriguez; F. Bertoni; M. Boi; I. Kwee (2012)
ALK signaling and target therapy in anaplastic large cell lymphoma. In: FRONTIERS IN ONCOLOGY. - ISSN 2234-943X
Scopus: 21

Articolo in atti di convegno Di Cataldo S.; Bottino A.; Ficarra E.;Macii E. (2012)
Applying Textural Features to the Classification of HEp-2 Cell Patterns in IIF images. In: 21st International Conference on Pattern Recognition (ICPR 2012), Tsukuba, Japan, November 11-15, 2012.
Web of Science: 12 - Scopus: 27
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Articolo di rivista Abate F.; Acquaviva A.; Paciello G.; Foti C.; Ficarra E.; Ferrarini A.; Delle Donne M.; Iacobucci I.; Soverini S.; Martinelli G.; Macii E. (2012)
Bellerophontes: a RNA-seq data analysis framework tor chimeric transcripts discovery base on accurate fusion model. In: BIOINFORMATICS, vol. 28 n. 16, pp. 2114-2121. - ISSN 1367-4803 [Disponibilità ristretta]
Web of Science: 15 - Scopus: 17
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Articolo in atti di convegno Shkurti A.; Acquaviva A.; Ficarra E.; Orsi M.; Macii E. (2012)
CHARACTERIZATION OF COARSE GRAIN MOLECULAR DYNAMIC SIMULATION PERFORMANCE ON GRAPHIC PROCESSING UNIT ARCHITECTURES. In: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012), Vilamoura, Algarve (Portugal), 1-4 Feb 2012. pp. 339-342 [Disponibilità ristretta]
Web of Science: 1
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Articolo di rivista Di Cataldo S.; Ficarra E.; Macii E. (2012)
Computer-aided techniques for Chromogenic Immunohistochemistry: Status and Directions. In: COMPUTERS IN BIOLOGY AND MEDICINE, vol. 42 n. 10, pp. 1012-1025. - ISSN 0010-4825
Web of Science: 24 - Scopus: 29
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Articolo di rivista Deriu M.A.; Shkurti A.; Paciello G.; Bidone T.C.; Morbiducci U.; Ficarra E.; Audenino A.; Acquaviva A. (2012)
Multiscale Modelling of Cellular Actin Filaments: From Atomistic Molecular to Coarse Grained Dynamics. In: PROTEINS, vol. 80 n. 6, pp. 1598-1609. - ISSN 0887-3585
Web of Science: 11 - Scopus: 14

Articolo in atti di convegno Abate F.; Paciello G.; Acquaviva A.; Ficarra E.; Ferrarini A.; Delledonne M.; Macii E. (2012)
A NOVEL ANALYSIS FLOW FOR FUSED TRANSCRIPTS DISCOVERY FROM PAIRED-END RNA-SEQ DATA. In: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012), Vilamoura, Algarve (Portugal), 1-4 February 2012. pp. 331-334
Web of Science: 0 - Scopus: 0

Articolo di rivista Valentini S., Natale M., Ficarra E., Barmaz A. (2012)
New Software for the Identification and Characterization of Peptides Generated during Fontina Cheese Ripening Using Mass Spectrometry Data. In: JOURNAL OF CHEMISTRY AND CHEMICAL ENGINEERING, vol. 6 n. 4, pp. 323-326. - ISSN 1934-7375
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Articolo di rivista Natale M., Caiazzo A., Bucci E.M., Ficarra E. (2012)
A Novel Gaussian Extrapolation Approach for 2D Gel Electrophoresis Saturated Protein Spots. In: GENOMICS, PROTEOMICS & BIOINFORMATICS, pp. 336-344. - ISSN 1672-0229
Scopus: 7
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Articolo di rivista Paula H. Reyes Herrera, Elisa Ficarra (2012)
One Decade of Development and Evolution of MicroRNA Target Prediction Algorithms. In: GENOMICS, PROTEOMICS & BIOINFORMATICS, vol. 10 n. 5, pp. 254-263. - ISSN 1672-0229
Scopus: 31
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Articolo in atti di convegno Terzo O, Mossucca L, Acquaviva A, Abate F, Ficarra E, Provenzano R (2012)
Optimizing Splicing Junction Detection in Next Generation Sequencing Data on a Virtual-GRID Infrastructure. In: The 6th International Conference on Bioinformatics and Biomedical Engineering, Shanghai, 17-20 My 2012.
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Articolo in atti di convegno Terzo O, Mossucca L, Acquaviva A, Abate F, Ficarra E, Provenzano R (2012)
Reverse Engineering of TopHat: Splice Junction Mapper for Improving Computational Aspect. In: ISMS 2012 - 3rd International Conference on Intelligent Systems, Modelling and Simulation, Kota Kinabalu, 8 – 10 February 2012.
Scopus: 1
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Articolo in atti di convegno Shkurti A., Acquaviva A., Ficarra E., Orsi M., Macii E., Essex J.W. (2012)
Towards Low Cost Virtual Biological Laboratories: Molecular Modelling Simulation on Commodity Hardware. In: Young Modellers Forum, Londra, Novembre 2012.

Articolo in atti di convegno Natale M.; Caiazzo A.; Bucci E.M.; Ficarra E. (2012)
A novel Gaussian fitting approach for 2D gel electrophoresis saturated protein spots. In: Proceedings of the International Conference on Bioinformatics Models, Methods andAlgorithms,, Vilamoura, Algarve, Portugal, 1-4 Feb. 2012. pp. 335-338
Web of Science: 0 - Scopus: 0
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2011

Articolo di rivista Ficarra E.; Di Cataldo S.; Acquaviva A.; Macii E. (2011)
Automated Segmentation of Cells with IHC Membrane Staining. In: IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, vol. 58 n. 5, pp. 1421-1429. - ISSN 0018-9294
Web of Science: 13 - Scopus: 19
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Articolo in atti di convegno G. Paciello; A. Acquaviva; E. Ficarra; M. Deriu; E. Macii (2011)
Binding free energy calculation via Molecular Dynamics simulations for a miRNA:mRNA interaction. In: Bioinformatics 2011, International Conference on Bioinformatics Models Methods and Algorithms, Rome (IT), 26 - 29 January 2011. pp. 318-321
Web of Science: 0 - Scopus: 0

Articolo di rivista Giulia Paciello; Andrea Acquaviva; Elisa Ficarra; Marco Deriu; Enrico Macii (2011)
A Molecular Dynamics study of a miRNA:mRNA interaction. In: JOURNAL OF MOLECULAR MODELING, vol. 17 n. 11, pp. 2895-2906. - ISSN 1610-2940
Web of Science: 9 - Scopus: 9

Articolo in atti di convegno Di Cataldo S., Ficarra E., Acquaviva A., Macii E. (2011)
Motion artifact correction in ASL images: an improved automated procedure. In: Bioinformatics and Biomedicine (BIBM), 2011 IEEE International Conference on, Atlanta (USA), 12-15 Nov. 2011. pp. 410-413
Web of Science: 0 - Scopus: 0
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Articolo in atti di convegno Francesco Abate; Elisa Ficarra; Andrea Acquaviva; Enrico Macii (2011)
A New Latent Semantic Analysis Based Methodology For Knowledge Extraction From Biomedical Literature And Biological Pathways Databases. In: BIOINFORMATICS, International Conference on Bionformatics Models, Methods and Algorithms, Rome, Italy, 26-29 January 2011. pp. 66-74
Web of Science: 0 - Scopus: 1

Articolo in atti di convegno Terzo O; Mossucca L; Ruiu P; Abate F; Acquaviva A; Ficarra E; Macii E (2011)
Next Generation Sequencing on Hybrid Grid Cloud Infrastructure. In: 2011 World Congress on Engineering and Technology (CET), Shanghai, China, 28 Oct - 2 Nov 2011. pp. 572-575

Articolo in atti di convegno Mazzillo M., Fallica P.G., Ficarra E., Messina A., Romeo M., Zafalon R. (2011)
Solid state photodetectors for nuclear medical imaging applications. In: IEEE Design Automation and Test in Europe, Grenoble (France), 14-18 March, 2011.
Web of Science: 0 - Scopus: 1

Articolo in atti di convegno Terzo O.; Mossucca L.; Ruiu P.; Abate F.; Acquaviva A.; Ficarra E.; Macii E. (2011)
An effective grid infrastructure for efficiently support high throughput sequencing analysis. In: 2nd. International Conference on Engineering and Meta-Engineering (ICEME 2011), Orlando (USA), March 27th - 30th, 2011.
Web of Science: 0

Articolo di rivista Reyes Herrera Ph; Ficarra E; Acquaviva A; Macii E (2011)
miREE: miRNA Recognition Elements Ensemble. In: BMC BIOINFORMATICS, vol. 12 n. 454. - ISSN 1471-2105
Web of Science: 16 - Scopus: 20
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Articolo in atti di convegno F. Abate; A. Acquaviva; E. Ficarra; G. Paciello; E. Macii; A. Ferrarini; M. Delledonne; S. Soverini; G. Martinelli (2011)
A novel framework for chimeric transcript detection based on accurate gene fusion model. In: IEEE International Conference on Bioinformatics and Biomedicine, Atlanta, Georgia (USA), 12-15 Nov. 2011. pp. 34-41
Web of Science: 0 - Scopus: 0
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2010

Articolo di rivista S. Di Cataldo; Ficarra E.; Acquaviva A; Macii E. (2010)
Achieving the Way for Automated Segmentation of Nuclei in Cancer Tissue Images through Morphology-Based Approach: a Quantitative Evaluation. In: COMPUTERIZED MEDICAL IMAGING AND GRAPHICS, vol. 34, pp. 453-461. - ISSN 0895-6111
Web of Science: 16 - Scopus: 21
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Articolo in atti di convegno Abate F., Ficarra E., Acquaviva A., Macii E. (2010)
An Automated Tool for Scoring Biomedical Terms Correlation Based on Semantic Analysis. In: 3th International Workshop on Intelligent Informatics in Biology and Medicine, Krakow, Poland, February 15th - 18th. pp. 700-705
Web of Science: 0 - Scopus: 3

Articolo di rivista Di Cataldo S.; Ficarra E.; Acquaviva A.; Macii E. (2010)
Automated segmentation of tissue images for computerized IHC analysis. In: COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, vol. 100, pp. 1-15. - ISSN 0169-2607
Web of Science: 31 - Scopus: 51
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Articolo in atti di convegno Ardita Shkurti, Andrea Acquaviva, Elisa Ficarra, Mario Orsi, Martino Ruggiero, Enrico Macii (2010)
GPU Acceleration of Simulation Tool for Lipid-Bilayers. In: IEEE International Conference on Bioinformatics and Biomedicine, Hong Kong, 18-21 Dec 2010. pp. 849-850
Web of Science: 0 - Scopus: 1

Articolo in atti di convegno Reyes-Herrera P.H; Acquaviva A; Ficarra E.; Macii E (2010)
MicroRNA Target Prediction and Exploration through Candidate Binding Sites Generation. In: 3th International Workshop on Intelligent Informatics in Biology and Medicine, Krakow, Poland, February 15th - 18th. pp. 683-688
Web of Science: 1 - Scopus: 1

2009

Capitolo di libro Apiletti D; Bruno G.; Ficarra E; Baralis E (2009)
Extraction of Constraints from Biological Data. In: Biomedical Data and Applications / AMANDEEP S. SIDHU; THARAM S. DILLON. Springer, Berlin Heidelberg, pp. 169-186. ISBN 9783642021923
Scopus: 0

Articolo in atti di convegno Reyes-Herrera P.H; Acquaviva A; Ficarra E.; Macii E (2009)
Novel Method for MicroRNA Target Prediction Using a Genetic Algorithm. In: 7th Rocky Mountain Bioinformatics Conference, Aspen, Colorado - USA, December 10th - 12th. pp. 50-51

2008

Capitolo di libro S. Di Cataldo; Ficarra E.; E. Macii (2008)
Automated Discrimination of Pathological Regions in Tissue Images: Unsupervised Clustering vs Supervised SVM Classification. In: Biomedical Engineering Systems and Technologies. Springer, HEIDELBERG, pp. 344-356. ISBN 9783540922186
Scopus: 1
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Articolo in atti di convegno S. Di Cataldo; Ficarra E.; E. Macii (2008)
Fully-Automated Segmentation of Tumor Areas in Tissue Confocal Images. In: IEEE/ACM Biosignals- International Conference on Bio-inspired Systems and Signal Processing, Madeira, Portugal, January 28-31, 2008. pp. 116-123
Web of Science: 0 - Scopus: 0

Articolo di rivista Ficarra E.; De Micheli G; Yoon S; Benini L; Macii E (2008)
Joint co-clustering: co-clustering of genomic and clinical bioimaging data. In: COMPUTERS & MATHEMATICS WITH APPLICATIONS, vol. 55(5), pp. 938-949. - ISSN 0898-1221
Web of Science: 3 - Scopus: 3
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Articolo in atti di convegno S. Di Cataldo; Ficarra E.; A. Acquaviva; E. Macii (2008)
Segmentation of Nuclei in Cancer Tissue Images: Contrasting Active Contours with Morphology-Based Approach. In: IEEE 8th Symposium on Bioinformatics and Bioengineering (BIBE2008), Athens, Greece, October 8-10, 2008.
Web of Science: 0 - Scopus: 5

Articolo in atti di convegno E. Baralis; G. Bruno; Ficarra E. (2008)
Temporal Association Rules for Gene Regulatory Networks. In: IEEE International Conference on Intelligent Systems (IS2008), Varna, Bulgaria, September 6-8, 2008. 12-2-12-7
Web of Science: 0 - Scopus: 4

2007

Articolo in atti di convegno Baralis E; Ficarra E; Fiori A.; Macii E (2007)
Gene-Markers Representation for Microarray Data Integration. In: 7th IEEE International Symposium on BioInformatics & BioEngineering, Boston, 14-17 October 2007. pp. 1056-1060
Web of Science: 0 - Scopus: 1

Articolo in atti di convegno S. Di Cataldo; Ficarra E.; E. Macii (2007)
Selection of Tumor Areas and Segmentation of Nuclear Membranes in Tissue Confocal Images: a Fully-Automated Approach. In: ", IEEE International conference on Bioinformatics and Biomedicine (BIBM2007), Silicon Valley, CA USA, November 2-4, 2007. pp. 390-398
Web of Science: 0 - Scopus: 3

2006

Articolo in atti di convegno Ficarra E.; De Micheli G; Yoon S; Benini L; Macii E (2006)
Bioimaging and Clinical Genomics. In: Phealth: IEEE International workshop on wearable micro and nanosystems for personalized Health, Luzern, Switzerland, 30 Jan. - 01Feb. 2006.

Articolo in atti di convegno Ficarra E.; Yoon S; Benini L; Macii E; De Micheli G (2006)
Clinical bioimaging and functional genomics. In: I FIMA International Conference on Models and Methods for Human Genomics, Ayas-Champoluc, Aosta Valley, ITALY, January 23-27, 2006.

Articolo in atti di convegno Ficarra E.; Macii E; Benini L; De Micheli G (2006)
Computer-aided evaluation of protein expression in pathological tissue images. In: IEEE International Symposium on Computer-Based Medical Systems (CBMS2004), Salt Lake City, WA USA, June 2006. pp. 413-418
Web of Science: 2 - Scopus: 11

Articolo di rivista Apiletti D; Bruno G; Ficarra E.; Baralis E (2006)
Data Cleaning and Semantic Improvement in Biological Databases. In: JOURNAL OF INTEGRATIVE BIOINFORMATICS, vol. 3(2):40. - ISSN 1613-4516

Articolo di rivista Masotti D; Ficarra E.; Benini L; Macii E; Zuccheri G (2006)
Optimized Techniques for DNA structural properties investigation. In: INTERNATIONAL JOURNAL ON ARTIFICIAL INTELLIGENCE TOOLS, vol. 15(5), pp. 695-709. - ISSN 0218-2130

2005

Articolo di rivista Ficarra E.; Benini L; Macii E; Zuccheri G (2005)
Automated DNA Fragments Recognition and Sizing through AFM Image Processing. In: IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE, vol. 9(4), pp. 508-517. - ISSN 1089-7771
Web of Science: 16 - Scopus: 20
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Articolo di rivista Ficarra E.; Masotti D; Benini L; Macii E; Zuccheri G; Samori B (2005)
Automatic Intrinsic DNA Curvature Computation from AFM Images. In: IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, vol. 52(12), pp. 2074-2086. - ISSN 0018-9294
Web of Science: 6 - Scopus: 8
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2004

Articolo in atti di convegno Ficarra E.; Benini L; Macii E; Zuccheri G (2004)
A Robust Algorithm for Automated Analysis of DNA Molecules in AFM Images. In: IASTED Biomedical Engineering (BioMED 2004), Innsbruck, AUSTRIA, February 2004. pp. 213-218
Web of Science: 1 - Scopus: 3

Articolo in atti di convegno Masotti D; Ficarra E.; Macii E; Benini L (2004)
Techniques for enhancing computation of DNA curvature molecules. In: IEEE Fourth Symposium on Bioinformatics and Bioengineering (BIBE2004), Taichung, TAIWAN, May 2004. pp. 22-29
Web of Science: 0 - Scopus: 1

Questa lista è stata generata il Mon Feb 19 03:02:11 2018 CET.