Pubblicazioni dell'autore: Giulia Paciello [Rubrica]

Livello precedente
Esporta come [feed] Atom [feed] DataCiteXML [feed] RSS 1.0 [feed] RSS 2.0
Vai a: 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011
Numero di pubblicazioni : 22.

2017

Tesi di dottorato Paciello, Giulia (2017)
Bioinformatics methods and tools for identifying disease-associated B-cell populations, miRNA patterns and gene fusions in RNA-Seq data. Tesi di dottorato [Disponibilità ristretta]
[img]

Articolo di rivista Paciello, Giulia; Ficarra, Elisa (2017)
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. In: BMC BIOINFORMATICS, vol. 18 n. 1. - ISSN 1471-2105
Web of Science: 0 - Scopus: 0

2016

Articolo in atti di convegno A Padella, G Simonetti, G Paciello, A Ferrari, E Zago, C Baldazzi, V Guadagnuolo, C Papayannidis, V Robustelli, E Imbrogno, N Testoni, M Cavo, M Delledonne, I Iacobucci, Ct Storlazzi, E Ficarra, G Martinelli (2016)
A COMBINED APPROACH TO DETECT RARE FUSION EVENTS IN ACUTE MYELOID LEUKEMIA. In: 21st Congress Of The European Hematology Association, Copenhagen, Denmark, June 9–12, 2016. pp. 666-667
Web of Science: 0

Articolo in atti di convegno Paciello, G.; Pighi, C.; Ficarra, E.; Zamo', A. (2016)
Detection of rearranged light chain sequences by RNA-Seq in B-cell lymphomas and reactive lymphadenopathies. In: EAHP 2016: 18th Meeting of the European Association for Hemathopathology, Basilea, 3-8 Sept. 2016.

Articolo in atti di convegno Jacobs, J.; Christiaens, ; V, .; Potier, ; D, .; Svetlichnyy, ; D, .; Romanelli, ; L, .; Taskiran, Ihsan; I, .; Paciello, ; G, .; Aerts, (2016)
Directly linking non-coding SNPs to changes in epithelial enhancer activity. In: EMBL Transcription and Chromatin, Edition 12, Heidelberg, 27-30 Aug 2016.

Articolo di rivista Simona Soverini, Caterina De Benedittis, Michela Rondoni, Cristina Papayannidis, Elisa Ficarra, Giulia Paciello, Marco Manfrini, Manuela Mancini, Roberta Zanotti, Luigi Scaffidi, Giorgina Specchia, Francesco Albano, Serena Merante, Chiara Elena, Livio Pagano, Domenica Gangemi, Patrizia Tosi, Luana Bavaro, (2016)
The Genomic and Transcriptomic Landscape of Systemic Mastocytosis. In: BLOOD, vol. 128 n. 22. - ISSN 0006-4971
Web of Science: 0

Articolo di rivista Antonella Padella, Giorgia Simonetti, Anna Ferrari, Giulia Paciello, Elisa Zago, Carmen Baldazzi, Viviana Guadagnuolo, Cristina Papayannidis, Valentina Robustelli, Enrica Imbrogno, Nicoletta Testoni, Massimo Delledonne, Ilaria Iacobucci, Tiziana Clelia Storlazzi, Elisa Ficarra, Pier-Luigi Lollini And Giovanni Martinelli (2016)
Novel fusion transcripts identified by RNAseq cooperate with somatic mutations in the pathogenesis of acute myeloid leukemia. In: CANCER RESEARCH, vol. 76 n. 14, p. 113. - ISSN 1538-7445
Web of Science: 0

Articolo di rivista Urgese, Gianvito; Paciello, Giulia; Acquaviva, Andrea; Ficarra, Elisa (2016)
isomiR-SEA: An RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation. In: BMC BIOINFORMATICS, vol. 17 n. 148. - ISSN 1471-2105
Web of Science: 1 - Scopus: 1
[img]
Preview

2015

Articolo in atti di convegno Urgese, Gianvito; Paciello, Giulia; Ficarra, Elisa; Macii, Enrico; Acquaviva, Andrea (2015)
On the relevance of a complete characterisation of miRNAs, isomiRs and miRNA-mRNA interaction sites through miRNA-specific alignment tools. In: RNAi 2015: Short & Long Non-coding RNAs, 10th International Conference & Exhibition, Oxford (UK), 24-26 March 2015.
[img]
Preview

Articolo di rivista Padella, A.; Simonetti, G.; Paciello,G.; Ferrari, A.; Zago, E.; Baldazzi, C.; Guadagnuolo, V.; Papayannidis, C.; Robustelli, V.; Imbrogno, E.; Testoni, N.; Musuraca, G.; Soverini, S.; Delledonne, M.; Iacobucci, I.; Storlazzi, C.T.; Ficarra, E.; Martinelli, G. (2015)
RNA Sequencing Reveals Novel and Rare Fusion Transcripts in Acute Myeloid Leukemia. In: BLOOD, vol. 126, p. 3627. - ISSN 0006-4971
Web of Science: 0

Articolo di rivista Giulia Paciello; Andrea Acquaviva; Chiara Pighi; Alberto Ferrarini; Enrico Macii; Alberto Zamò; Elisa Ficarra (2015)
VDJSeq-Solver: In Silico V(D)J Recombination Detection tool. In: PLOS ONE, vol. 10 n. 3, pp. 1-26. - ISSN 1932-6203
Web of Science: 4 - Scopus: 4
[img]
Preview

2014

Articolo in atti di convegno Urgese G.; Paciello G.; Acquaviva A.; Ficarra E.; Graziano M.; Zamboni M. (2014)
Dynamic Gap Selector: A Smith Waterman Sequence Alignment Algorithm with Affine Gap Model Optimisation. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014. pp. 1347-1358
Web of Science: 2
[img]
Preview

Articolo di rivista Antonella Padella; Giorgia Simonetti; Viviana Guadagnuolo; Emanuela Ottaviani; Anna Ferrari; Elisa Zago; Francesca Griggio; Marianna Garonzi; Giulia Paciello; Simona Bernardi; Carmen Baldazzi; Cristina Papayannidis; Maria Chiara Abbenante; Francesca Volpato; Raffaele Calogero; Nicoletta Testoni; Elisa Ficarra; Alberto Ferrarini; Massimo Delledonne; Ilaria Iacobucci; Giovanni Martinelli (2014)
Next-Generation Sequencing Analysis Revealed That BCL11B Chromosomal Translocation Cooperates with Point Mutations in the Pathogenesis of Acute Myeloid Leukemia. In: BLOOD, vol. 124 n. 21. - ISSN 0006-4971
Web of Science: 0

Articolo in atti di convegno Paciello Giulia; Andrea Acquaviva; Consalvo Petti; Claudio Isella; Enzo Medico; Elisa Ficarra (2014)
A Novel Pipeline for Identification and Prioritization of Gene Fusions in Patient-derived Xenografts of Metastatic Colorectal Cancer. In: BIOSTEC 2014, Eseo, Angers, Loire Valley, France, 3-6 March 2014. pp. 142-148
Web of Science: 0 - Scopus: 0

Articolo in atti di convegno Urgese G.; Paciello G.; Isella C.; Medico E.; Macii E.; Ficarra E.; Acquaviva A. (2014)
miR-SEA: miRNA Seed Extension based Aligner Pipeline for NGS Expression Level Extraction. In: 2nd International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO 2014), Granada, April 7-9 2014. pp. 1015-1026
Web of Science: 1
[img]
Preview

2013

Articolo in atti di convegno Giulia Paciello; Elisa Ficarra; Alberto Zamò; Chiara Pighi; Carmelo Foti; Francesco Abate; Enrico Macii; Andrea Acquaviva (2013)
A novel pipeline for V(D)J junction identification using RNA-Seq paired-end reads. In: Bioinformatics 2013, International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11-14 February 2013.
Web of Science: 0 - Scopus: 0
[img]
Preview

2012

Articolo di rivista Abate F.; Acquaviva A.; Paciello G.; Foti C.; Ficarra E.; Ferrarini A.; Delle Donne M.; Iacobucci I.; Soverini S.; Martinelli G.; Macii E. (2012)
Bellerophontes: a RNA-seq data analysis framework tor chimeric transcripts discovery base on accurate fusion model. In: BIOINFORMATICS, vol. 28 n. 16, pp. 2114-2121. - ISSN 1367-4803 [Disponibilità ristretta]
Web of Science: 15 - Scopus: 17
[img] [img]

Articolo di rivista Deriu M.A.; Shkurti A.; Paciello G.; Bidone T.C.; Morbiducci U.; Ficarra E.; Audenino A.; Acquaviva A. (2012)
Multiscale Modelling of Cellular Actin Filaments: From Atomistic Molecular to Coarse Grained Dynamics. In: PROTEINS, vol. 80 n. 6, pp. 1598-1609. - ISSN 0887-3585
Web of Science: 11 - Scopus: 14

Articolo in atti di convegno Abate F.; Paciello G.; Acquaviva A.; Ficarra E.; Ferrarini A.; Delledonne M.; Macii E. (2012)
A NOVEL ANALYSIS FLOW FOR FUSED TRANSCRIPTS DISCOVERY FROM PAIRED-END RNA-SEQ DATA. In: International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012), Vilamoura, Algarve (Portugal), 1-4 February 2012. pp. 331-334
Web of Science: 0 - Scopus: 0

2011

Articolo in atti di convegno G. Paciello; A. Acquaviva; E. Ficarra; M. Deriu; E. Macii (2011)
Binding free energy calculation via Molecular Dynamics simulations for a miRNA:mRNA interaction. In: Bioinformatics 2011, International Conference on Bioinformatics Models Methods and Algorithms, Rome (IT), 26 - 29 January 2011. pp. 318-321
Web of Science: 0 - Scopus: 0

Articolo di rivista Giulia Paciello; Andrea Acquaviva; Elisa Ficarra; Marco Deriu; Enrico Macii (2011)
A Molecular Dynamics study of a miRNA:mRNA interaction. In: JOURNAL OF MOLECULAR MODELING, vol. 17 n. 11, pp. 2895-2906. - ISSN 1610-2940
Web of Science: 7 - Scopus: 7

Articolo in atti di convegno F. Abate; A. Acquaviva; E. Ficarra; G. Paciello; E. Macii; A. Ferrarini; M. Delledonne; S. Soverini; G. Martinelli (2011)
A novel framework for chimeric transcript detection based on accurate gene fusion model. In: IEEE International Conference on Bioinformatics and Biomedicine, Atlanta, Georgia (USA), 12-15 Nov. 2011. pp. 34-41
Web of Science: 0 - Scopus: 0
[img]
Preview

Questa lista è stata generata il Fri Sep 22 16:53:57 2017 CEST.